PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010196.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 420aa    MW: 43846.2 Da    PI: 5.9531
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010196.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-161766155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++y+G+r  +++g+Wv+eIr+p++   ++r++lg+f tae+Aa a++ a+++l+g
  Do010196.1 17 PDYRGIR--SRSGKWVSEIREPRK---TRRIWLGTFPTAEMAAVAYDVAARALRG 66
                68****6..678*********843...5*************************98 PP

2AP252.81e-16247297155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + ykGVr +   grWv+e+r+p   g r+r +lg+f tae+Aa+a++ a+++l+g
  Do010196.1 247 PVYKGVRSRN-PGRWVCEVREP--HG-RQRLWLGTFETAEMAARAHDVAALALRG 297
                 68****9666.9******9996..33.5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-91766IPR001471AP2/ERF domain
CDDcd000181.39E-251776No hitNo description
Gene3DG3DSA:3.30.730.108.8E-281875IPR001471AP2/ERF domain
PROSITE profilePS5103220.5341874IPR001471AP2/ERF domain
SMARTSM003802.0E-301880IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-181975IPR016177DNA-binding domain
PfamPF008476.9E-12247297IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-29248307IPR001471AP2/ERF domain
PROSITE profilePS5103221.47248305IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-19248306IPR016177DNA-binding domain
SMARTSM003801.6E-26248311IPR001471AP2/ERF domain
CDDcd000183.00E-25249307No hitNo description
PRINTSPR003672.7E-7249260IPR001471AP2/ERF domain
PRINTSPR003672.7E-7271287IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSSDHGGPAS PRSGKHPDYR GIRSRSGKWV SEIREPRKTR RIWLGTFPTA EMAAVAYDVA  60
ARALRGPDAA LNFPDLAASR PAPVSTSADD IRAAAAEAAA ALQEPDRRSL ARGGGAPGRG  120
NAPGAAGGSG AAQQQAGGSS GAAAQQEGAG SSQYFLDEEA LFQTPQYLRN MAAGMMMSPP  180
RLGRNSSDDS PDPSDGYGGY YTSSGTPSPP AAGDGGGGGG EDAYMTVSSA PPKRRAGRTK  240
FKETRHPVYK GVRSRNPGRW VCEVREPHGR QRLWLGTFET AEMAARAHDV AALALRGRGA  300
CLNFADSPRV LRVPPQGAGH DEIRRAAVEA AELFRPQPGE HNAGGSEAAA AAVGAPDAQG  360
SGGLGGGDFA YYPVDDGLEF EMQGYLDMSQ GMLIDPPPAN AGQSAWIDDE YDCEVSLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-121374263ATERF1
3gcc_A2e-121374263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560440.0EU956044.1 Zea mays clone 1556129 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976544.11e-127PREDICTED: dehydration-responsive element-binding protein 1E
SwissprotA2XWL61e-106DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ8H2731e-106DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLK3Y9W31e-127K3Y9W3_SETIT; Uncharacterized protein
STRINGSi011005m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-35C-repeat-binding factor 4